Transcription Factor Binding Sites Database Coupon
DEEPTFACTOR: A DEEP LEARNING-BASED TOOL FOR THE …
Significance Identification of transcription factors (TFs) is a starting point for the analysis of transcriptional regulatory systems of organisms. Here, we report the development of DeepTFactor, a deep learning-based tool that … ...
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JASPAR - A DATABASE OF TRANSCRIPTION FACTOR BINDING PROFILES
The JASPAR CORE database contains a curated, non-redundant set of profiles, derived from published collections of experimentally defined transcription factor binding sites … ...
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Get CodeTRANSFAC - GENEXPLAIN
TRANSFAC ® is the database of eukaryotic transcription factors, their genomic binding sites and DNA-binding profiles. Dating back to a very early compilation, it has been carefully maintained and curated since … ...
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Get CodeMOST WIDELY USED TOOLS FOR TRANSCRIPTION FACTOR BINDING …
Apr 20, 2021 JASPAR CORE is an online curated database of transcription factor binding sites [3,4]. This database consists of a non-redundant set of profiles and experimentally defined transcription … ...
Category: Online
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Get CodeTRANSCRIPTION FACTOR ENRICHMENT ANALYSIS (TFEA) QUANTIFIES …
Jun 2, 2021 Unfortunately, acquisition of protein–DNA binding is not sufficient for understanding regulation, as many binding sites do not lead to altered transcription … ...
Author Jonathan D Rubin, Jacob T Stanley, Rutendo F Sigauke, Cecilia B Levandowski, Zachary L Maas, Jessica...Publish Year 2021
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TF2DNA DATABASE - FISER LAB
Introduction Genetic regulation depends to a great extent on sequence-specific transcription factors. Transcription factors specifically recognize short DNA … ...
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Get CodeTRANSCRIPTION FACTOR BINDING SITE DATABASES - WIKIPEDIA
13 rows Transcription factors are proteins that bind genomic regulatory sites. Identification of genomic regulatory elements is essential for understanding the dynamics … ...
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Get CodeGENOME-SCALE IDENTIFICATION OF TRANSCRIPTION FACTORS THAT
May 25, 2018 Using the same analyses procedure, we applied AccessTF to predict transcription factor binding sites in K562 cells using DNase-seq data in ENCODE … ...
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Get CodeHTPSELEX DATABASE - EPFL
The HTPSELEX database contains sets of invitro selected transcription factor binding site sequences obtained with SELEX and high-throughput SELEX method. The … ...
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SYSTEMATIC ANALYSIS OF BINDING OF TRANSCRIPTION FACTORS TO ... - NATURE
Jan 27, 2021 Here we have systematically assessed the binding of 270 human transcription factors to 95,886 noncoding variants in the human genome using an ultra … ...
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Get CodeGTRD: A DATABASE OF TRANSCRIPTION FACTOR BINDING SITES IDENTIFIED BY ...
Oct 24, 2016 GTRD—Gene Transcription Regulation Database ( http://gtrd.biouml.org )—is a database of transcription factor binding sites (TFBSs) identified by ChIP-seq … ...
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Get CodeTFLINK: AN INTEGRATED GATEWAY TO ACCESS TRANSCRIPTION FACTOR–TARGET ...
Sep 16, 2022 Here, we address this gap by introducing the TFLink gateway, which uniquely provides experimentally explored and highly accurate information on … ...
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Get CodeJASPAR - DOCUMENTATION - GENE REG
JASPAR Documentation. Last updated: 15 Sep. 2021. JASPAR is a regularly maintained open-access database storing manually curated TF binding preferences as position … ...
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DATABASE FOR PLANT TRANSCRIPTION FACTOR BINDING SITES
Oct 21, 2022 Therefore, a good database for plant TFs and transcription factor binding sites (TFBSs) will be useful for starting a series of complex experiments. In this chapter, … ...
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Get CodeDATABASE FOR PLANT TRANSCRIPTION FACTOR BINDING SITES - PUBMED
Therefore, a good database for plant TFs and transcription factor binding sites (TFBSs) will be useful for starting a series of complex experiments. In this chapter, PlantPAN … ...
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Get CodeTFBSSHAPE - UNIVERSITY OF SOUTHERN CALIFORNIA
TFBSshape provides DNA shape features for transcription factor binding sites (TFBSs). These structural features refine the description of TF binding specificities and provide … ...
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Get CodeGTRD: A DATABASE OF TRANSCRIPTION FACTOR BINDING SITES IDENTIFIED BY ...
Jan 1, 2017 INTRODUCTION. Recognition of transcription factor (TF) binding sites (TFBSs) in genomes has been one of the most important tasks of modern biology since … ...
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TRANSFAC: A DATABASE ON TRANSCRIPTION FACTORS AND THEIR DNA …
Jan 1, 1996 These matrices can be used for scanning genomic sequences for potential transcription factor binding sites with higher reliability than simple IUPAC string … ...
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Get CodeREGPRECISE: A DATABASE OF CURATED GENOMIC INFERENCES OF
The RegPrecise allows for browsing the regulon collections for: (i) conservation of DNA binding sites and regulated genes for a particular regulon across diverse taxonomic … ...
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Get CodeFLY FACTOR SURVEY - UNIVERSITY OF MASSACHUSETTS CHAN MEDICAL SCHOOL
The FlyFactorSurvey database summarizes a project using the bacterial one-hybrid method to systematically describe the binding site preferences of transcription factors in … ...
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Get CodeENHANCING THE INTERPRETABILITY OF TRANSCRIPTION FACTOR BINDING SITE ...
Aug 7, 2020 Khan, A. et al. Jaspar 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucl. Acids Res. 46 , … ...
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TRANSCRIPTION FACTOR SPECIFICITY LIMITS THE NUMBER OF DNA-BINDING ...
Jan 28, 2022 Database of transcription factor binding site motifs. All available 684 TFBS weight matrices from the SwissRegulon hg19 database Fantom5 collection [] were … ...
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